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Picture Perfect: Imaging Gives Biomarkers New Look

New tools promise to cut costs and speed trials, but challenges remain.
By Pete Mitchell, Contributing Editor, Pharma DD

November/December  2006


STARK CONTRAST: In vivo brain images from optical imaging. Meningitis at 19h post infection.

Traditional survival-based endpoints are fast going out of fashion as a way of measuring drug efficacy, in favor of in vivo imaging.

There is plenty of choice among imaging techniques, but no single method does everything the researcher wants. Moreover it’s hard to find a modality that’s suitable for preclinical research and that can be carried over to the clinic for human trials.

In vivo imaging in clinical trials has been growing ever since the FDA accepted surrogate endpoints to prove drug efficacy,” says Mark Weinstein, CEO of Bio-Imaging Technologies, a “core facility” that performs imaging studies on behalf of pharmaceutical companies. In oncology for example–— which represents about half of all drug research today–— there has been a huge shift away from survival endpoints: “Instead companies are using time to progression, which is essentially an imaging endpoint.”

The reason for this shift is both time and money. “Pick any of the drug studies going on now and most of them relate to life-threatening or at least life-altering conditions,” says Ken Faulkner, vice president of business development at Synarc, another core imaging firm. “The concept of using survival as the ultimate endpoint in these diseases–— which means perhaps waiting until you see tumor growth or death–— is increasingly disagreeable both for patients participating in the trial and for regulatory boards and ethical committees.”

In vivo imaging on the other hand provides “up-front” surrogate endpoints as a much faster measure of efficacy–— albeit usually in combination with biochemical markers in serum, says Faulkner. For Phase II and even early Phase III trials this is usually be good enough, though regulators often still insist on measurement of ultimate outcomes in the late Phase III pivotal trials leading to approval.

“Imaging doesn’t necessarily avoid having to do detailed, endpoint studies,” says Faulkner. “But it sure moves them further down the road in the approval process.”

Given time, survival endpoints may themselves not survive: Bio-Imaging’s Weinstein claims that about 80% of his company’s imaging work is now in pivotal studies. Much depends on the particular therapeutic area: Imaging is usually a primary endpoint in rheumatoid arthritis or osteoporosis, where the FDA will typically require the Phase II work to be done using imaging and markers, and only in Phase III demanding the “gold standard” of fracture data. In oncology, though, imaging data could sometimes be merely a strong secondary marker used in combination with survival and biochemical indicators.

“There is a lot of talk that taking imaging to drug discovery is going to shorten [the discovery process], and that has potential, but we need to be careful not to overplay it,” says Weinstein.

 

Take Your Pick

So what’s the favored imaging modality in clinical trials today? Again therapeutic area is often the deciding factor. In musculoskeletal disease there are already a lot of known X-ray biomarkers for bone and joint changes, and most of the work is focused on X-rays and DXA-based bone densitometry says Faulkner.

GETTING A BETTER VIEW: High precision multi-modal co-registration capabilities combined with simple multi-position imaging have been demonstrated to greatly enhance localization of molecular signals in live animals. In this example obtained on a Kodak Image Station, optical signals were generated from tumor cells in the head area of the animal. Co-registration with X-ray images along with multiple animal positions provide localization of the optical signals to specific bones in the head region of the animal (i) Ventral view: Ventral position imaging shows two optical signal generating metastatic lesions located in the cranial region of the mouse (ii) Lateral view, right side: Subsequent lateral position imaging clearly separates the two lesions to specific jaw and skull locations.

In oncology, where the key marker is tumor size, the key technologies have been high-resolution anatomical imaging methods such as computed tomography (CT) and magnetic resonance imaging (MRI). CT scanners are fast and comparatively cheap but poor at soft tissue discrimination, whereas MRI works well with soft tissue. Both techniques are favored in cardiology where formation and growth of plaques are reliable markers of atherosclerotic heart disease, although ultrasound is also much used because of its ability to measure blood flow.

MRI and CT are also in favor because they can produce quantitative results, rather than qualitative images that need to be interpreted by expert radiologists. The latter can introduce an element of subjectivity that is unwelcome by regulators. “FDA would like us to move to quantitative endpoints as much as possible,” says Weinstein. “Advances in resolution will allow us to do that, and as the standard deviation [i.e. error margin] comes down we may eventually be able to run clinical studies with fewer patients. But that won’t happen for some time because the agencies are so risk averse.”

Of course, technology advances are changing the balance among preferred imaging methods all the time. Bigger magnets for MRI are improving its resolution to the point where it can sometimes replace X-rays. In rheumatoid arthritis, for example, historically the gold standard has been X-ray detection of joint space narrowing and bone erosion in hands and feet. But recently, Weinstein’s company has done clinical sub-studies of anti-inflammatory drugs, where high-field MRI was able to pick up changes in these biomarkers less than six months after therapy began, rather than the two years usual with X-ray film.

According to Faulkner, the biggest change is in the shift to functional imaging using techniques like positron emission tomography (PET) and its close relative SPECT (single photon emission computed tomography). In PET, patients are injected with a radionuclide-labeled sugar–— fluorodeoxyglucose or FDG–— that is preferentially taken up by cells with high metabolic rate. The radionuclide atoms then decay, generating high-energy photons. Collecting these photons into an image highlights regions of metabolic activity rather than just static structural information.

This is especially useful in neurological diseases like Alzheimer’s that are challenging to monitor in any other way. “It’s a wonderful combination of a chemical biomarker with a medical image,” says Faulkner. “It tells us that the chemical event is happening but it tells us where too.”

MRI can also deliver functional images when used with specialized contrast agents that gravitate to particular tissues, and this sort of functional MRI is on the rise, says Faulkner. But typically PET and MRI machines cost millions of dollars, limiting their application to core imaging facilities.

 

Preclinical Paradox

What’s true of the clinic is even truer of in vivo animal research. “The pharma companies think imaging can to some extent short-circuit the discovery process,” says Bill McLaughlin, director of R&D at Kodak, which supplies small-animal optical imaging systems. The company counts among its users companies like Merck, Bristol-Myers Squibb, Novartis, Aventis, BD Biosciences, SuperGen, Genentech, and Zymogenetics.

PHOTO FUSION: Simultaneous in vivo imaging with spin echo MRI and 18F-FDG PET in a rat, showing registered cross-sectional images through the head.

AN ILLUMINATING GLOW: Simultaneously acquired PET and CT images showing distribution of 18F-fluoride ion in a mouse.

According to McLaughlin, pharma researchers now want to take families of leads right into animals in vivo instead of doing all their lead identification and optimization in vitro and only then going into animals with the best candidates.

“They can look at efficacy, pharmacokinetics and safety testing all at once and get results within days, as opposed to looking at the endpoints which could be weeks or months”, McLaughlin says. And of course imaging techniques in animals don’t have to be approved by the FDA.

Cost reduction is another driving factor notes Mark Roskey, vice president of reagents and applied biology at Caliper. Imaging often allows researchers to use fewer animals than when doing histopathology on every sample and ultimately sacrificing the animal. “You can image the functional biology over time using the same animals,” he points out.

Caliper acquired Xenogen in August and now has a portfolio of in vivo optical imaging products based on fluorescence and luminescence. Roskey says optical imaging is still the most important modality for work with small animals. It delivers enough sensitivity and detection efficiency to see all through the animal. Moreover, probe toxicity isn’t the touchstone issue in animals that it is in humans and the variety of fluorescent probes now available means optical imaging can measure a wide range of biomarkers in animals.

“We can do 3D tomography, looking at a particular fluorescent probe or a glowing group of cells deep within a mouse on our standard IVIS platform,” says Roskey. “This can give a 3D image of the tumor and monitor tumor growth as a biomarker. Or it can monitor other biomarkers such as a particular protease or cathepsin or some other enzyme activity that is related to tumor formation.”

Optical imaging is also relatively cost-effective compared with CT and PET, requiring only a CCD camera and reagents or probes. “Taking a picture of mice and using software to quantify the signal is fairly simple for research scientists to do, and it doesn’t involve million-dollar machines or big magnets,” says Roskey. “And you can start to quantify as few as 500 1,000 cells, so for example you can look at very small, early-stage tumors.”

Biomarker expertise is the limitation: “At the moment there are probably fewer imaging-related biomarkers than there are serum-based or other biomarkers,” he says. “But that’s an issue for biomarkers generally. Increasingly people are working on developing more of them.”

Subjectivity of results has been a challenge though software is providing an answer, says Roskey. “So far it has not been easy to quantify fluorescence in in vivo imaging because of the effects of autofluorescence in the animal and attenuation of the signal through the tissue,” he says. “But the development of 3D imaging and the ability to do spectral deconvolution and transillumination of the source has allowed us to effectively quantitate fluorescence in small animals, and is really reducing the subjectivity.”

Kodak’s McLaughlin stresses that although optical imaging has advantages–— it is easy and convenient, and the fluorochrome reagents used have long shelf life and low cost compared with radionuclides–— it isn’t a panacea. Because it is mostly a dark-field technology where only the target cells are illuminated, the signal appears on its own, without any anatomical context. Also, because fluorescence emitted from cells deep within a mouse is scattered and diffused on its journey to the surface, it provides only weak positional information: in short, the image is blurred.

“It is very clear to us that it is not just optical imaging that people want,” McLaughlin says. “What everybody wants now is multimodality–— metabolic information combined with an anatomical structure and contextual information.”

 

Multimodal Mission

This makes sense, especially as multimodal imaging is already widely accepted in the clinic. As imaging expert Simon Cherry of University California, Davis, notes, “You often hear people say they’d like an imager with the spatial resolution of MRI, the temporal resolution of ultrasound, and the sensitivity of PET.”

That may be unrealistic but it’s an ideal that can be approximated. The usual approach is to combine a modality that excels at providing structural information (such as CT, MRI, and ultrasound) with one that supplies functional or molecular information (i.e. optical imaging, PET and SPECT). This, says Cherry, allows enabling function and structure to be examined simultaneously in the same individual and for the two types of information to be correlated to identify the exact location of particular cellular events.

In oncology for example, “hot spots” with suspiciously enhanced uptake of a tumor-seeking radiotracer can be accurately localized and correlated with anatomy.

PET/CT and SPECT/CT whole-body imaging systems are now standard in clinical research, says Bio-Imaging’s Mark Weinstein. “New machines are routinely sold with both modalities,” he says. “It’s used a lot in early oncology work, because the big challenge in oncology is to see whether the drug, and maybe its delivery vehicle, are getting to the right place at the right time and affecting the malignant cells. With PET/CT you can see both in real time.”

Similar multimodal approaches are being developed for preclinical imaging in small-animal models. Kodak has within the last year launched a small animal imaging system combining three modalities: optical (fluorescence or bioluminescence), radioisotopes, and X-ray.

The optical or radioisotope image gives information on molecular interactions–— binding of antibody to particular receptor or cells, or activation of smart probes by enzymes–— while adding X-ray imaging allows more precise location of the signal. “It puts the target in an anatomical frame of reference,” says McLaughlin.

The system can also image PET and SPECT isotopes and thus indicate areas of high metabolic activity like tumors. “Our system gives a 2D planar image rather than 3D, and it doesn’t give the resolution of typical microPET, but it gives good general distribution information in the animal,” he says. It also costs under $100,000, compared with a few million dollars for microPET.

The system uses specialized phosphor screens–— one for X-ray imaging, and another one for radioisotope imaging. These screens slide in and out of the optical plane under the animal without the need to move anything (movement of the subject is a classic problem in multimodal imaging). Different images are all taken at the same optical plane by the same camera and so they “snap together” to make a single multimodal image without needing any sophisticated image-fusion software, says McLaughlin. “The images can be overlaid to within 80 µm, giving excellent co-registration of optical and isotope molecular signals with the X-ray background.”

But this isn’t ideal, says Cherry. “What’s needed is a single detector system for optical and PET imaging,” he says. That could allow simultaneous monitoring of the expression of two different reporter genes, for example. For now, that ideal remains distant. 

(SIDEBAR)  

Found in Translation

A key challenge facing imaging researchers is the need to translate methods from one stage of drug discovery to the next.

In animal models, says UC Davis’ Simon Cherry, there is an urgent need to correlate in vivo whole-body images with ex vivo images from high-resolution techniques like histopathology and autoradiography. Researchers need tools for registering excised biopsy or post-mortem tissue with its exact location in an in vivo imaging study, so they can correlate cellular ‘micro’ changes with data at the ‘macro’ level.

Moreover, there is the usual difficulty in bridging preclinical work to clinical trials.

“We know animal models don’t always behave like humans. That’s one reason so few drugs make it through the pipeline,” says Faulkner. “That can happen when using imaging biomarkers as well and we don’t have a great answer on how to stop it happening. You can’t put mice into an MRI machine and do the same things to their small bodies that you could do with a human.”

Toxicity of contrast agents and probes is a thorny problem for optical imaging in particular. As a result, says Caliper’s Roskey, there’s no direct translation of molecular imaging into humans. A few reagents being developed for small animal imaging can be used in the clinic, including one fluorescent probe that tracks angiogenesis by binding to VEGF, “but it’s early days yet,” he says.

An even more fundamental problem for optical imaging is its limited depth. Light cannot penetrate more than a few centimeters through tissue, so while it can escape from deep inside a small animal; the same isn’t true of humans except at the extremities or near the surface. Moreover, the longer the emission path, the more interference is present from background fluorescence. All optical imaging companies are working on this problem.

One route is tomographic imaging, collecting signal from all around or through the animal. But the solution most likely to be translatable to humans will be epifluorescent mode, where the signal is collected on the same side as the incident light.

Kodak is following two main epifluorescent routes, says McLaughlin. One is multi-spectral imaging, using optical probes emitting at many different wavelengths. Sophisticated algorithms can “unmix” the resulting multi-colored signals from one another and also from the autofluorescence background, boosting the signal-noise ratio and improving sensitivity and depth.

The second avenue is nanotechnology. Kodak has designed fluorescent nanoparticles that emit extremely strong signals but do not contain the toxic heavy metal atoms present in many current high-brightness fluorophores. This means they can potentially be used in humans, says McLaughlin. The nanoparticles provide a scaffold for binding both target-specific probes as well as highly fluorescent moieties. They also provide for improved distribution through the body, which can be a problem for probes based on heavy metal ions. Imaging systems using these new fluorophores will be tried out in pharma companies and top academic labs “within months,” he says. “Combining brighter fluorophores with multi-spectral imaging really improves on how far you can see into animals and humans,” he says.

Maybe Cherry’s ideal of “spatial resolution of MRI, the temporal resolution of ultrasound, and the sensitivity of PET” provided with a single detector system is still distant, but at least some elements of it are in sight.  P.M.