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Proteins Require New Analytical Tools
By Laurie Sullivan

November/December  2006

The recent explosion in biotechnology productivity has made protein analysis critically important. The statistics speak for themselves: According to Ernst & Young, in 2005, biotech enjoyed over $60 billion in revenues from hundreds of marketed products, secured 32 new product approvals from the FDA, and had more than 300 innovative products in late-stage clinical trials and thousands more in development (see Pharma DD July/Aug. 2006 Outlook, “Ernst & Young: Biotech Looks Poised for Maturity”).

Development of protein-based therapeutics requires novel analytical approaches that can provide direct, real-time analysis of proteins and their reactions in a broad range of complex media. Methods used for gene analysis are not necessarily optimal for studying proteins.

Says Lance Liotta, co-director of the Center for Applied Proteomics and Molecular Medicine at George Mason University: “New tools for analyzing proteins, in particular how proteins interact and transmit information, is critical for the future of drug discovery, for the simple reason that all the targets for the new molecular inhibitors are proteins. The traditional means of measuring genes and gene transcripts do not provide any information about the functional activated state of signal pathway proteins that are the drug targets of the future.”

It’s clear that novel tools to better understand the complex interplay between proteins are poised to become a hot area of development. In this issue’s “Bench Notes,” we present two methods for the detailed characterization of proteins and real-time analysis of their activity. 

 

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