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Pharmaceutical Discovery, Jun 1, 2005 
Compound Management: Integrating Chemistry, Biology and Technology in the Modern Drug Discovery Environment
Michael J. Sofia, Jay M. Stevenson, John Houston

Panorama? Mouse/Rat Tissue Extract Protein Array Kit: A New Tool for Protein Expression Analysis
Eliezer Kopf, Annette Haward, Dorit Zharhary
Pharmaceutical Discovery
The Panorama™ Mouse/Rat Tissue Extract Protein Array Kit is a convenient and robust tool for accurate determination of protein distribution and expression. The array contains 62 extracts from 10 mouse and 12 rat tissues spotted on a nitrocellulose-coated slide, and is a reliable platform for rapid evaluation of protein expression.

Introduction Sigma's Panorama™ Mouse/Rat Tissue Extract Protein Array Kit (Product Code MRPA1) contains 62 extracts from 10 mouse and 12 rat tissues spotted on a nitrocellulose-coated slide. Each tissue is represented by three extracts (total tissue, nuclear and cytoplasmic cell fractions). All extracts were prepared in denaturing, reducing buffer and boiled. Extracts of the same origin (i.e., cytoplasmic) from different tissues were spotted at equal protein concentrations. In addition, a series of positive and negative controls were spotted. Information on specific positioning of extracts and controls can be viewed at: www.sigma-aldrich.com/abarray.

 

Figure 1. Rabbit primary antibodies to different protein targets were tested, each on a separate slide: 1) negative control-only secondary antibody: anti-rabbit IgG, peroxidase conjugate; 2) anti-androgen receptor (product code A 9853); 3) anti-cofilin (product code C 8736); 4) anti-binculin (product code V 4139) and 5) anti-neurofilament 200 (product code N 4142). The antibodies were developed with anti-rabbit IgG, peroxidase conjugate and a chemiluminescent substrate. Note the different protein profile expression of the proteins.
Experimental Conditions and Results Differential expression of proteins in tissues. The Panorama™ Mouse/Rat Tissue Extract Protein Array Kit was used to profile the expression of proteins in mouse and rat tissues using antibodies to several protein targets. A labeling system with secondary antibody conjugated to peroxidase and CPS1 chemiluminescent substrate (product code CPS1) was used. Resulting chemiluminescence was detected using autoradiograph film. As expected, each antibody showed a different pattern of protein expression (Figure 1). The results clearly show that some of the proteins are broadly expressed in many tissues while others are more specific to certain tissues.

 

Figure 2. A comparison of fluorescent and chemiluminescent labeling and detection methods. Anti-neurofilament 200 (product code N 4142) was applied on two slides. Slide A was further incubated with a peroxidase-conjugated secondary antibody and developed with a chemiluminescent substrate (product xode CPS1), while slide B was incubated with a Cy3 dye-conjugated secondary antibody. Similar results were obtained with both detection methods.
Comparison of fluorescent and chemiluminescent detection systems. Two detection systems, fluorescent and chemiluminescent, were tested and compared for sensitivity. A rabbit polyclonal antibody to neurofilament protein was used in both assays. One slide was further incubated with goat anti-rabbit IgG conjugated to Cy3, and the other slide with the same secondary antibody was conjugated to peroxidase. Very similar results were obtained, leading to the conclusion that, under the chosen conditions, both methods are comparable (Figure 2).

Conclusion Panorama Mouse/Rat Tissue Extract Protein Array kit provides a reliable platform for the rapid evaluation of serum, hybridoma supernatant, ascites fluid, purified antibody or fractionated sera. The mouse and rat tissue proteins spotted are extracts of total tissue, nuclear and cytoplasmic cell fractions. The array is suitable for detection of proteins in various tissues and compatible with fluorescent or chemiluminescent detection systems.

Reference Correspondence and requests for additional information should be addressed to: Eliezer Kopf at

Sigma-Aldrich Corporation 3050 Spruce St.
St. Louis, MO 63103 USA
Tel. 800-521-8956; Fax 314-771-5757
www.sigma-aldrich.com/