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Pharmaceutical Discovery, Jun 1, 2005 
Compound Management: Integrating Chemistry, Biology and Technology in the Modern Drug Discovery Environment
Michael J. Sofia, Jay M. Stevenson, John Houston

Automation of a Double-Sink PAMPA Permeability Assay on the Biomek? FX Laboratory Automation Workstation
Yu Suen, Konstantin Tsinman, Zhu Zhu, Graham Threadgill
Pharmaceutical Discovery

Early drug discovery ADME assays, such as fast Caco-2 screens, can help in rejecting test compounds that lack good pharmaceutical profiles. A cost-effective, high-throughput method — parallel artificial membrane permeability analysis — that uses a phospholipid artificial membrane that models passive transport of epithelial cells, is becoming increasingly popular. The pION PAMPA Evolution 96 System (with Double-Sink and Gut-Box) is a new surrogate assay that predicts the gastrointestinal tract absorption of candidate drug molecules at different pH conditions. This paper describes Beckman Coulter's Biomek FX Single Bridge Laboratory Automation Workstation PAMPA Assay System that features a 30-minute incubation time using an on-deck integrated Gut-Box and a SpectraMax microplate spectrophotometer. The permeability coefficients of drug standards with diverse physiochemical properties were compared from both PAMPA and Caco-2 assays automated using the Biomek FX Workstation. These automated assays can be used for high-throughput ADME screening in early drug discovery.

Introduction Incorporating predictive ADME assays in earlier stages of drug discovery can help in rejecting molecules that lack necessary pharmacological properties. Drug bioavailability is influenced by factors including absorption and metabolism. The U.S. FDA issued the Biopharmaceutics Classification System, which is the guidance for using in vitro models to assess drug bioavailability. The parallel artificial membrane permeability assay (PAMPA) using membranes coated with a concentrated mixture of phospholipids in dodecaine has been widely accepted as a surrogate model for high-throughput permeability assays measuring passive transport.

 

Figure 1. The Biomek FX-ADMETox Workstation with integrated pION Gut-Box and Molecular Devices' SPECTRAmax 384 Plus.
The Biomek FX Laboratory Automation Workstation was used to automate the PAMPA Evolution 96 permeability assay. The PAMPA assay with Gut-Box and SpectraMax Plate Reader (Molecular Devices, Sunnyvale, CA, USA) is integrated on the Biomek FX Laboratory Automation Workstation (Figure 1). Drug permeability and membrane retention for seven reference drugs of different physiochemical properties were determined at different pH conditions and are reported here. The rank order of these reference drugs match well with the conventional Caco-2 permeation assay. The automated PAMPA Evolution 96 assay can be used for high-throughput primary screening of drug candidates for ADME properties.

 

Figure 2. A PAMPA Sandwich Plate System for the determination of drug permeability through a phospholipid mixture under different pH conditions.
Experimental Conditions All liquid-handling steps for the PAMPA assay are performed on the Single Bridge Multichannel Biomek FX Laboratory Automation Workstation, driven from pION's (London, UK) PAMPA Evolution 96 Command Software. The PAMPA Evolution 96 Permeability Assay Kit includes System Solution, Acceptor Sink Buffer (ASB), Double-Sink Lipid Solution and a PAMPA Sandwich plate, preloaded with magnetic disks (Figure 2). Test compounds used in this analysis include 10 mM stock solutions of ketoprofen, verapamil, metaprolol, carbamazepine, ranitidine, propranolol and atenolol. The PAMPA assay is initiated by transferring 3 µL of lipid to the support membrane in the acceptor well, followed by addition of 200 µL of ASB (pH 7.4). Then, 180 µL of diluted test compound (50 µM in system buffer at pH 5.0, 6.2, 7.4 and 8.5) is added to the donor wells.

The PAMPA sandwich plate is assembled and placed on the Gut-Box for the course of the assay. The Gut-Box generates a rotating magnetic field that creates an aqueous boundary layer in the donor wells that mimics the condition in the human gut and shortens the required incubation time for the assay from 4 h to 30 min. The distribution of the compounds in the donor and acceptor buffers (100 µL aliquot) is determined by the measure of the UV spectra from 200 to 500 nm using the SpectraMax reader. The permeability coefficient is determined using the maximum absorbance from 200 to 500 nm using the following formula:

Pe = 2.3VD/[A (t-tLAG)]log10{1/(1-R)·CD (t)/CD(0)}

 

Figure 3. UV spectral scans of ketoprofen at different pH levels and a plot of the calculated Log Pe vs. pH.
Where VD is the donor well volume (cm3); A is the filter area (cm2); CD (0) is the sample concentration in the donor well at time 0 (mole/cm3); CD (t) is the sample concentration in the donor well at time t (mole/cm3); t is the interval of time (sec); tLAG is the lag time needed to reach steady state conditions (sec) and R is the membrane retention (related to the membrane/water partition coefficient).

 

Table I. A PAMPA assay, that differentiates drugs with optimal permeability coefficient at different pH conditions
Results We show the ultraviolet spectral scans of a test drug compound from replicate wells and multiple pH conditions in Figure 3. The scans are overlaid to demonstrate the reproducibility of the data and to enable the identification of outliers. As shown in the summary table (Table 1), the PAMPA assay differentiates the permeability coefficient of the test compound drug standards under different pH conditions. The rank order of the drug standards correlates with that determined using a Caco-2 system on both the Biomek FX and the Biomek 3000 (data not shown).

Conclusions The Double-Sink PAMPA permeability assay mimics in vivo conditions by the use of a chemical sink in the acceptor wells and pH gradient in the donor wells. The use of the pION Gut-Box integrated on the deck has shortened the PAMPA assay incubation time to 30 min.

The permeability coefficient and rank order of the seven test drug compounds correlates with data obtained using the in vitro Caco-2 assay and in vivo permeability properties measured in rat intestinal perfusions. The automated Double-Sink PAMPA permeability assay, using the Biomek FX Workstation, can be used for high-throughput ADME screening in early drug discovery.

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