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Pharmaceutical Discovery, Aug 1, 2005 
RNAi: A Robust Tool For Target Identification And Validation

By Subrahmanyam Yerramilli , Eric Lader , Dirk Loeffert , Friederike Wilmer , Peter Hahn , Elizabeth Scanlan

Interconnected Signaling Pathways Rethinking Drug Specificity as a Desirable Objective
The authors offer their opinions on looking to signaling pathways for disease treatment answers.
Rangaprasad Sarangarajan, Shireesh Apte
Pharmaceutical Discovery

Rangaprasad Sarangarajan
Intracellular signaling occurs through cascades of interconnected/interdependent networks, rather than through linear pathways. Because effector molecules modulating this network typically function in both redundant and pleiotypic fashion, selective modulation of a single intracellular signaling pathway seems highly improbable. The desirable objective of targeting a specific signaling pathway for potential therapy is based on the assumptions that (a) selective modulation of a single (disease causative) pathway and/or molecule will result in negligible side effects and (b) a single molecule can selectively block a single (specific) signaling pathway.

That these assumptions may not necessarily be true is exemplified by the recent recall of the cyclooxygenase-2 (COX-2) inhibitor Vioxx™ (Merck, Whitehouse Station, New Jersey, USA). Selective blockade of COX-2 results in COX-1 mediated increase in the ratio of thromboxane (an endothelial vasoconstrictor and agonist for platelet aggregation) to prostaglandin I2 (an endothelial vasodilator and platelet aggregation antagonist) and may be one of the many reasons for the observed increase in the incidence of cardiac related events in patients taking Vioxx.

The scientific literature is replete with examples of such egregious "cross talk" even among pathways with functions that seem diametrically opposite, making it practically impossible to block a single pathway with just one molecule without affecting other pathways; as a corollary, it necessitates that one molecule should possess myriad pharmacological effects. Alternatively, a number of molecules might be required to block specific sections upstream or downstream of signaling junctions where different pathways meet.

Abnormal expression patterns of receptors, enzymes or mutant proteins (by themselves or in combination) appear to be optimum targets for modulating specific signaling pathways to alleviate symptoms. Thus, in chronic myelogenous leukemia (CML), Gleevec's (Novartis Pharmaceuticals Corporation, East Hanover, New Jersey, USA) target — the mutant protein p210BCR-ABL, arising from a reciprocal chromosomal rearrangement — essentially defines the disease it was designed to treat. In contrast, in the absence of well-defined molecular etiopathology of disease or in situations where the molecular phenotype is less accurate in prediction of a clinical response, the rationale to target specific signaling pathways cannot be justified and is often not efficacious.

A major component of extracts/decoctions of natural products are glycosides, the aglycone portion comprised of terpenes, phenolic flavones, anthraquinones or tannins, which display varying degrees of anti-oxidant properties. Since the redox status of a cell is an established generic mechanism that can modulate multiple signaling pathways, these extracts are likely to exert their pharmacologic effects by modulating many such pathways in unison. The antioxidants in this "evolutionary cocktail" could represent effective up-regulators or down-regulators of multiple pathways or specific sections of these pathways involved in "cross talk" with the (disease) causative pathway, such that when administered together they produce the desired pharmacologic effect with minimal side effects. For example, curcuminoids present in turmeric not only are potent inhibitors of COX-2 but also inhibit platelet aggregation via the thromboxane pathway.

It would be ironic if multiple signaling pathways were found to be modulated in a similar fashion by an optimized "cocktail" of synthetic drugs and ancient herbal recipes. The reductionist single-gene or protein-centric paradigm common in current biological research may need to be modified into a network-centric approach with the added recognition that a majority of disorders are probably polygenic, with substantial environmental and epigenetic components. The magic "shotgun" may prove more efficacious and safer than the magic "bullet."

Editor's note: Debuting this month, our "Voice of Discovery" column offers an opportunity for readers to voice their opinions, on any number of topics, to the drug discovery community. To respond to this installment, or to submit a guest editorial of your own, contact Douglas McCormick, Editor-in-Chief at

Rangaprasad Sarangarajan is assistant professor of pharmacology and toxicology at Massachusetts College of Pharmacy and Health Sciences. Shireesh Apte (not pictured) is a scientist at Baxter IV Systems in Murray Hill, New Jersey, USA. Rangaprasad Sarangarajan can be reached at Massachusetts College of Pharmacy and Health Sciences, School of Pharmacy—Worcester, 19 Foster Street, Worcester, MA 01608. E-mail